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环境说明
操作系统版本#xff1a;ubuntu 18.04
python版本#xff1a;3.6.9
gcc版本#xff1a;7.5.0
编译安装路径#xff1a;/usr/local
cmake: 3.10.2
所需要的源码包我已经打包放到我的资源。
2021年1月份已经写过一篇Ubuntu 编译安装的帖子F…2023年10月29日
环境说明
操作系统版本ubuntu 18.04
python版本3.6.9
gcc版本7.5.0
编译安装路径/usr/local
cmake: 3.10.2
所需要的源码包我已经打包放到我的资源。
2021年1月份已经写过一篇Ubuntu 编译安装的帖子FLEXPART安装配置笔记成功案例——筑梦之路_筑梦之路的博客-CSDN博客
也遇到比较多的网友来咨询在编译安装过程中的问题因此今天再次整理一下编译安装的过程顺便解决之前写的不是很明确的地方欢迎大家交流指正。
准备编译工作
# 更新软件源
sudo apt-get update# 安装编译工具和依赖包
sudo apt-get install -y g gfortran autoconf libtool automake flex bison cmake python3-dev python3-pip git vim curl unzip build-essential libbz2-dev libssl-dev libreadline-dev libsqlite3-dev tk-dev ruby# 安装python相关包sudo apt-get install -y python3 python3-eccodes python3-genshi python3-numpy gfortran fftw3-dev libeccodes-dev libemos-dev# 配置pip显示的格式sudo mkdir ~/.pipsudo cat ~/.pip/pip.conf EOF
[list]
formatcolumns
EOF# 建立软链接sudo ln -sf /usr/bin/python3 /usr/bin/python
sudo ln -sf /usr/bin/pip3 /usr/bin/pip# 检查sudo python -V
sudo pip -V 准备python环境
# 安装pip的包sudo pip3 install cdsapi ecmwf-api-client eccodes1.6.1 -i https://pypi.douban.com/simple#检查是否安装成功sudo python3 -c import eccodes; print(eccodes.__version__)
sudo python3 -c import genshi; print(genshi.__version__)
sudo python3 -c import numpy; print(numpy.__version__)
sudo pip3 list | grep cdsapi | awk {print $2}
sudo python3 -c import ecmwfapi; print(ecmwfapi.__version__) 编译安装
1. 编译安装jasper
# 下载源码包wget -c http://www.ece.uvic.ca/~mdadams/jasper/software/jasper-1.900.1.zip# 解压文件到指定目录unzip jasper-1.900.1.zip -d /usr/local/# 新建目录mkdir -p /usr/local/jasper# 切换目录cd /usr/local/jasper-1.900.1# 配置CFLAGS-fPIC ./configure --prefix/usr/local/jasper# 编译
make# 编译检查
make check# 安装
make install
2. 编译安装grib_api
# 下载源码wget -c https://people.freebsd.org/~sunpoet/sunpoet/grib_api-1.28.0-Source.tar.gz# 解压到指定目录tar -zxvf grib_api-1.28.0-Source.tar.gz -C /usr/local/# 创建目录mkdir -p /usr/local/grib_api# 切换目录cd /usr/local/grib_api-1.28.0-Source# 编译三部曲./configure --prefix/usr/local/grib_api --with-jasper/usr/local/jaspermakemake checkmake install
3. 编译安装eccodes
# 下载源码wget -c https://confluence.ecmwf.int/download/attachments/45757960/eccodes-2.7.3-Source.tar.gz?apiv2# 解压源码到指定目录tar xvzf eccodes-2.7.3-Source.tar.gz -C /usr/local/# 创建目录mkdir -p /usr/local/eccodes# 切换目录cd /usr/local/eccodes-2.7.3-Source# 编译三部曲mkdir build cd buildcmake -DCMAKE_INSTALL_PREFIX/usr/local/eccodes /usr/local/eccodes-2.7.3-Source -DPYTHON_EXECUTABLE/usr/bin/python3makectestmake install# 配置环境变量cat /etc/profile EOF
export ECCODES_SAMPLES_PATH$PATH:/usr/local/eccodes/share/eccodes/samples
export ECCODES_DEFINITION_PATH$PATH:/usr/local/eccodes/share/eccodes/definitions
EOFsource /etc/profile# 检查验证sudo apt-get install libeccodes-dev
python3 -m eccodes selfcheck# 正常输出如下
Found: ecCodes v2.6.0.
Your system is ready.4. 编译安装zlib
# 下载源码v1.2.8 sudo wget http://www.zlib.net/fossils/zlib-${v}.tar.gz# 解压到指定目录sudo tar -xf zlib-${v}.tar.gz -C /usr/local/ cd /usr/local/zlib-${v}# 编译三部曲sudo ./configure --prefix/usr/localsudo make make install
5. 编译安装 szlib
# 下载源码v2.1
wget http://sources.buildroot.net/szip/szip-${v}.tar.gz# 解压到指定目录tar -xf szip-${v}.tar.gz -C /usr/local/cd /usr/local/szip-${v} mkdir -p /usr/local/szip# 编译三部曲./configure --prefix/usr/local/szip
make
make install
6. 编译安装hdf5
# 下载源码v1.8.13wget https://www.gfd-dennou.org/arch/ucar/netcdf/netcdf-4/hdf5-${v}.tar.gz# 解压到指定目录tar -xf hdf5-${v}.tar.gz -C /usr/local/ cd /usr/local/hdf5-${v}# 设置变量prefix/usr/local/hdf5-$vecho Add HDF5_DIR$prefix to .bashrcecho ~/.bashrcecho # HDF5 libraries for python ~/.bashrcecho export HDF5_DIR$prefix ~/.bashrc# 编译三部曲./configure --enable-shared --enable-hl --prefix$HDF5_DIRmake -j 2 # 2 for number of procs to be usedmake install
7. 编译安装netcdf-c
# 下载源码v4.1.3wget https://www2.mmm.ucar.edu/wrf/OnLineTutorial/compile_tutorial/tar_files/netcdf-${v}.tar.gz# 解压到指定目录tar -xf netcdf-${v}.tar.gz -C /usr/local/ cd /usr/local/netcdf-${v}# 设置变量prefix/usr/local/echo Add NETCDF4_DIR$prefix to .bashrc
echo ~/.bashrc
echo # NETCDF4 libraries for python ~/.bashrc
echo export NETCDF4_DIR$prefix ~/.bashrc# 编译三部曲CPPFLAGS-I$HDF5_DIR/include LDFLAGS-L$HDF5_DIR/lib ./configure --enable-netcdf-4 --enable-shared --enable-dap --prefix$NETCDF4_DIRmake
make install
8. python Netcdf4 安装
# install pythons netCDF4sudo pip3 install cftime1.3.1 -i https://pypi.douban.com/simplesudo pip3 install numpy1.19.4 -i https://pypi.douban.com/simplesudo pip3 install netCDF41.5.5.1 -i https://pypi.douban.com/simplesudo python3 -c import netCDF4;print(netCDF4.__version__) 9. 编译安装FLEXPART10.4
# 下载源码wget -c https://www.flexpart.eu/downloads/66# 解压到指定目录tar -xvf 66 -C /usr/local/ # 切换目录cd /usr/local/flexpart_v10.4_3d7eebf# 备份src目录cp -r src src-backup-date %F# 修改makefile文件vim makefile#### 修改第一处#modified to 64-73行ROOT_DIR /usr/localF90 /usr/bin/gfortranMPIF90 /usr/bin/mpifortINCPATH1 ${ROOT_DIR}/grib_api/includeINCPATH2 ${ROOT_DIR}/jasper/includeINCPATH3 /includeLIBPATH1 ${ROOT_DIR}/grib_api/libLIBPATH2 ${ROOT_DIR}/jasper/libLIBPATH3 /lib#### 修改第二处### Enable netCDF output?
ifeq ($(ncf), yes)NCOPT -DUSE_NCF -lnetcdff -lnetcdf
elseNCOPT -UUSE_NCF
endif#### 修改第三处## LIBRARIES
LIBS -lgrib_api_f90 -lgrib_api -lm -ljasper $(NCOPT) -lnetcdffFFLAGS -I$(INCPATH1) -I$(INCPATH2) -I$(INCPATH3) -O$(O_LEV) -g -cpp -m64 -mcmodelmedium -fconvertlittle-endian -frecord-marker4 -fmessage-length0 -fltojobserver -O$(O_LEV) $(NCOPT) $(FUSER) #-Warray-bounds -fcheckall # -marchnativeDBGFLAGS -I$(INCPATH1) -I$(INCPATH2) -I$(INCPATH3) -O$(O_LEV_DBG) -g3 -ggdb3 -cpp -m64 -mcmodelmedium -fconvertlittle-endian -frecord-marker4 -fmessage-length0 -fltojobserver -O$(O_LEV_DBG) $(NCOPT) -fbacktrace -Wall -fdump-core $(FUSER) # -ffpe-trapinvalid,overflow,denormal,underflow,zero -Warray-bounds -fcheckallLDFLAGS $(FFLAGS) -L$(LIBPATH1) -Wl,-rpath,$(LIBPATH1) $(LIBS) -L$(LIBPATH2) -L$(LIBPATH3)
LDDEBUG $(DBGFLAGS) -L$(LIBPATH1) $(LIBS) -L$(LIBPATH2) -L$(LIBPATH3)# 编译make ncfyes# 配置环境变量
cat /etc/profile EOF
export LD_LIBRARY_PATH/usr/local/grib_api/lib:$LD_LIBRARY_PATH
EOFsource /etc/profile
10. 准备安装flex_extract
# 拉取源码cd /usr/localgit clone --single-branch --branch master https://www.flexpart.eu/gitmob/flex_extract1编译安装zlib 1.2.9 # 下载zlib 1.2.9源码编译安装zlib 1.2.9版本wget https://sourceforge.net/projects/libpng/files/zlib/1.2.9/zlib-1.2.9.tar.gz# 解压到指定目录tar -zxvf zlib-1.2.9.tar.gz -C /usr/localcd /usr/local/zlib-1.2.9# 编译三部曲./configure; make; make install# 创建软链接ln -s -f /usr/local/lib/libz.so.1.2.9 /lib/x86_64-linux-gnu/libz.so.1
2) 编译安装emoslib
# 下载源码wget https://confluence.ecmwf.int/download/attachments/3473472/libemos-4.5.9-Source.tar.gz# 创建目录mkdir /usr/local/emoslib# 解压到指定目录tar -xzf libemos-4.5.9-Source.tar.gz -C /usr/local/# 切换目录cd /usr/local/libemos-4.5.9-Source# 编译安装mkdir build ; cd build
cmake .. -DCMAKE_INSTALL_PREFIX/usr/local/emoslib /usr/local/libemos-4.5.9-Source
make
make install
3安装ECMWF 与ERA5安装权限
cat ~/.ecmwfapirc EOF
{url : https://api.ecmwf.int/v1,key : 8fb37b516ba233bde068613a8f08c785,email : 791653827qq.com
}
EOFcat ~/.cdsapirc EOF
url: {api-url}
key: {uid}:{api-key}
EOF
4) 修改makefile_local_gfortran文件
# 切换目录cd /usr/local/flex_extract/Source/Fortran/# 修改文件vim makefile_local_gfortran# change the original path of ECCODES_INCLUDE_DIR to
ECCODES_INCLUDE_DIR/usr/include
5) 执行安装flex_extract
# 切换目录cd /usr/local/flex_extract# 执行安装./setup_local.sh#成功结果输出如下内容WARNING: installdir has not been specified
flex_extract will be installed in here by compiling the Fortran source in /usr/local/flex_extract/Source/Fortran
Install flex_extract_v7.1.2 software at local in directory /usr/local/flex_extractUsing makefile: makefile_local_gfortran
gfortran -O3 -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -lemosR64 -I. -I/usr/include -fdefault-real-8 -fopenmp -fconvertbig-endian -c ./rwgrib2.f90
gfortran -O3 -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -lemosR64 -I. -I/usr/include -fdefault-real-8 -fopenmp -fconvertbig-endian -c ./phgrreal.f90
gfortran -O3 -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -lemosR64 -I. -I/usr/include -fdefault-real-8 -fopenmp -fconvertbig-endian -c ./grphreal.f90
gfortran -O3 -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -lemosR64 -I. -I/usr/include -fdefault-real-8 -fopenmp -fconvertbig-endian -c ./ftrafo.f90
gfortran -O3 -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -lemosR64 -I. -I/usr/include -fdefault-real-8 -fopenmp -fconvertbig-endian -c ./calc_etadot.f90
gfortran -O3 -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -lemosR64 -I. -I/usr/include -fdefault-real-8 -fopenmp -fconvertbig-endian -c ./posnam.f90
gfortran rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out -O3 -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -lemosR64 -fopenmp
ln -sf calc_etadot_fast.out calc_etadotlrwxrwxrwx 1 root root 20 Oct 29 06:30 ./calc_etadot - calc_etadot_fast.out 6测试flex_extract
# 测试flex_extractcd Testing/Installation/Calc_etadot
# execute the Fortran progam without arguments
../../../Source/Fortran/calc_etadot#成功结果展示
STATISTICS: 98842.4598 98709.7359 5120.5385
STOP SUCCESSFULLY FINISHED calc_etadot: CONGRATULATIONS 至此已经全部编译安装完成并测试成功。
这里附上python包的版本信息以供各位参考
# pip list
Package Version
---------------------- -------------------
asn1crypto 0.24.0
attrs 17.4.0
Automat 0.6.0
blinker 1.4
cdsapi 0.6.1
certifi 2018.1.18
cffi 1.15.1
cftime 1.3.1
chardet 3.0.4
click 6.7
cloud-init 23.1.2
colorama 0.3.7
command-not-found 0.3
configobj 5.0.6
constantly 15.1.0
cryptography 2.1.4
distro-info 0.18ubuntu0.18.04.1
eccodes 1.6.1
ecmwf-api-client 1.6.3
findlibs 0.0.5
Genshi 0.7
httplib2 0.9.2
hyperlink 17.3.1
idna 2.6
importlib-resources 5.4.0
incremental 16.10.1
Jinja2 2.10
jsonpatch 1.16
jsonpointer 1.10
jsonschema 2.6.0
keyring 10.6.0
keyrings.alt 3.0
language-selector 0.1
MarkupSafe 1.0
netCDF4 1.5.5.1
netifaces 0.10.4
numpy 1.19.5
oauthlib 2.0.6
PAM 0.4.2
pexpect 4.2.1
pip 9.0.1
pyasn1 0.4.2
pyasn1-modules 0.2.1
pycparser 2.21
pycrypto 2.6.1
pygobject 3.26.1
PyJWT 1.5.3
pyOpenSSL 17.5.0
pyserial 3.4
python-apt 1.6.5ubuntu0.7
python-debian 0.1.32
pyxdg 0.25
PyYAML 3.12
requests 2.18.4
requests-unixsocket 0.1.5
SecretStorage 2.3.1
service-identity 16.0.0
setuptools 39.0.1
six 1.11.0
sos 4.3
ssh-import-id 5.7
systemd-python 234
tqdm 4.64.1
Twisted 17.9.0
ubuntu-advantage-tools 27.2
ufw 0.36
unattended-upgrades 0.1
urllib3 1.22
wheel 0.30.0
zipp 3.6.0
zope.interface 4.3.2
如果不关心flexpart的版本可以直接使用apt-get命令安装
apt-get update apt-get install flexpart相关源码包在我的资源或者通过文中链接地址下载。
注意事项文中源码包的地址会随着时间过期若不能下载请自行搜索相关版本文件。
